Uses of Class
org.biojava.nbio.core.search.io.Hit

Packages that use Hit

Package	Description
org.biojava.nbio.core.search.io
org.biojava.nbio.core.search.io.blast

Uses of Hit in org.biojava.nbio.core.search.io

Methods in org.biojava.nbio.core.search.io that return types with arguments of type Hit

Modifier and Type	Method and Description
Iterator<Hit>	Result.iterator()

Constructor parameters in org.biojava.nbio.core.search.io with type arguments of type Hit

Constructor and Description
Result(String program, String version, String reference, String dbFile, HashMap<String,String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence)

Uses of Hit in org.biojava.nbio.core.search.io.blast

Method parameters in org.biojava.nbio.core.search.io.blast with type arguments of type Hit

Modifier and Type	Method and Description
BlastResultBuilder	BlastResultBuilder.setHits(List<Hit> hits)

Constructor parameters in org.biojava.nbio.core.search.io.blast with type arguments of type Hit

Constructor and Description
BlastResult(String program, String version, String reference, String dbFile, HashMap<String,String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence)