| Package | Description | 
|---|---|
| org.biojava.nbio.core.util | |
| org.biojava.nbio.structure.align.util | |
| org.biojava.nbio.structure.io | 
 Input and Output of Structures 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
PrettyXMLWriter
Implementation of XMLWriter which emits nicely formatted documents
 to a PrintWriter. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
XMLWriter | 
UserConfiguration.toXML(PrintWriter pw)
convert Configuration to an XML file so it can be serialized 
 | 
XMLWriter | 
UserConfiguration.toXML(XMLWriter xw)
convert Configuration to an XML file so it can be serialized
 add to an already existing xml file. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
XMLWriter | 
UserConfiguration.toXML(XMLWriter xw)
convert Configuration to an XML file so it can be serialized
 add to an already existing xml file. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
FileConvert.toDASStructure(XMLWriter xw)
Convert a protein Structure to a DAS Structure XML response . 
 | 
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