Package org.biojava.nbio.core.util

Interface Summary

Interface	Description
XMLWriter	Simple interface for building XML documents.

Class Summary

Class	Description
ConcurrencyTools	Static utility to easily share a thread pool for concurrent/parallel/lazy execution.
CRC64Checksum	Utility class that calculates a CRC64 checksum on a stream of bytes.
Equals	A set of helper methods which return true if the two parameters are equal to each other.
FlatFileCache	Provides a cache for storing multiple small files in memory.
Hashcoder	Contains helper methods for generating a HashCode without having to resort to the commons lang hashcode builders.
InputStreamProvider	A class that provides an InputStream from a File.
PrettyXMLWriter	Implementation of XMLWriter which emits nicely formatted documents to a PrintWriter.
SequenceTools
SingleLinkageClusterer	An implementation of a single linkage clusterer See http://en.wikipedia.org/wiki/Single-linkage_clustering
SoftHashMap<K,V>	A in memory cache using soft references.
StringManipulationHelper	A utility class for common String manipulation tasks.
UncompressInputStream	This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).
XMLHelper