Uses of Class
org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor

Packages that use AbstractUserArgumentProcessor

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.fatcat	Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
org.biojava.nbio.structure.align.seq

Uses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.ce

Subclasses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.ce

Modifier and Type	Class and Description
class	CeCPUserArgumentProcessor
class	CeSideChainUserArgumentProcessor
class	CeUserArgumentProcessor process the arguments from command line

Uses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.fatcat

Subclasses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.fatcat

Modifier and Type	Class and Description
class	FatCatUserArgumentProcessor

Uses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.seq

Subclasses of AbstractUserArgumentProcessor in org.biojava.nbio.structure.align.seq

Modifier and Type	Class and Description
class	SmithWatermanUserArgumentProcessor