Hierarchy For Package org.biojava.nbio.structure.align.ce

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.structure.align.AbstractStructureAlignment (implements org.biojava.nbio.structure.align.StructureAlignment)
    • org.biojava.nbio.structure.align.ce.CeMain (implements org.biojava.nbio.structure.align.StructureAlignment)
      • org.biojava.nbio.structure.align.ce.CeCPMain
      • org.biojava.nbio.structure.align.ce.CeSideChainMain (implements org.biojava.nbio.structure.align.StructureAlignment)
      • org.biojava.nbio.structure.align.ce.OptimalCECPMain
  • org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor (implements org.biojava.nbio.structure.align.ce.UserArgumentProcessor)
    • org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor
      • org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor
      • org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor
  • org.biojava.nbio.structure.align.ce.CECalculator
  • org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced
  • org.biojava.nbio.structure.align.ce.CeCPMain.CPRange
  • org.biojava.nbio.structure.align.ce.CeParameters (implements org.biojava.nbio.structure.align.ce.ConfigStrucAligParams)
    • org.biojava.nbio.structure.align.ce.CECPParameters
    • org.biojava.nbio.structure.align.ce.OptimalCECPParameters
  • org.biojava.nbio.structure.align.ce.GuiWrapper
  • org.biojava.nbio.structure.align.ce.StartupParameters
    • org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor.CeStartupParams
      • org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor.CeCPStartupParams

Interface Hierarchy

• org.biojava.nbio.structure.align.ce.ConfigStrucAligParams
• org.biojava.nbio.structure.align.ce.MatrixListener
• org.biojava.nbio.structure.align.ce.UserArgumentProcessor

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.structure.align.ce.CECPParameters.DuplicationHint
    • org.biojava.nbio.structure.align.ce.CeParameters.ScoringStrategy