Uses of Class
org.biojava.nbio.structure.align.ce.CECPParameters

Packages that use CECPParameters

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.

Uses of CECPParameters in org.biojava.nbio.structure.align.ce

Methods in org.biojava.nbio.structure.align.ce with parameters of type CECPParameters

Modifier and Type	Method and Description
static AFPChain	CeCPMain.filterDuplicateAFPs(AFPChain afpChain, CECalculator ceCalc, Atom[] ca1, Atom[] ca2duplicated, CECPParameters params)
static AFPChain	CeCPMain.postProcessAlignment(AFPChain afpChain, Atom[] ca1, Atom[] ca2m, CECalculator calculator, CECPParameters param) Circular permutation specific code to be run after the standard CE alignment