org.biojava.nbio.structure.align.pairwise

Class AligNPE

java.lang.Object

org.biojava.nbio.structure.align.pairwise.AligNPE

public class AligNPE
extends Object

Constructor Summary

Constructors

Constructor and Description
AligNPE()

Method Summary

Modifier and Type	Method and Description
static Alignable	align_NPE(Matrix sim, StrucAligParameters params) Align without penalizing end-gaps.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AligNPE

public AligNPE()

Method Detail

align_NPE

public static Alignable align_NPE(Matrix sim,
                                  StrucAligParameters params)

Align without penalizing end-gaps. Return alignment and score

Parameters:

sim - the similarity matrix

params - the structure alignment parameters to be used

Returns:

an Alignable