org.biojava.nbio.structure.io.mmcif.model

Class Refine

java.lang.Object

org.biojava.nbio.structure.io.mmcif.model.Refine

public class Refine
extends Object

Constructor Summary

Constructors

Constructor and Description
Refine()

Method Summary

Modifier and Type	Method and Description
String[][]	getAniso_B()
String	getB_iso_max()
String	getB_iso_mean()
String	getB_iso_min()
String	getCorrelation_coeff_Fo_to_Fc_free()
String	getCorrelation_coeff_Fo_to_Fc()
String	getDetails()
String	getEntry_id()
String	getLs_d_res_high()
String	getLs_d_res_low()
String	getLs_matrix_type()
String	getLs_number_parameters()
String	getLs_number_reflns_all()
String	getLs_number_reflns_obs()
String	getLs_number_reflns_R_free()
String	getLs_number_reflns_R_work()
String	getLs_number_restraints()
String	getLs_percent_reflns_obs()
String	getLs_percent_reflns_R_free()
String	getLs_R_factor_all()
String	getLs_R_factor_obs()
String	getLs_R_factor_R_free_error_details()
String	getLs_R_factor_R_free_error()
String	getLs_R_factor_R_free()
String	getLs_R_factor_R_work()
String	getLs_redundancy_reflns_obs()
String	getLs_wR_factor_R_free()
String	getLs_wR_factor_R_work()
String	getOccupancy_max()
String	getOccupancy_min()
String	getOverall_FOM_free_R_set()
String	getOverall_FOM_work_R_set()
String	getOverall_SU_B()
String	getOverall_SU_ML()
String	getOverall_SU_R_Cruickshank_DPI()
String	getOverall_SU_R_free()
String	getPdbx_data_cutoff_high_absF()
String	getPdbx_data_cutoff_high_rms_absF()
String	getPdbx_data_cutoff_low_absF()
String	getPdbx_diffrn_id()
String	getPdbx_isotropic_thermal_model()
String	getPdbx_ls_cross_valid_method()
String	getPdbx_ls_sigma_F()
String	getPdbx_ls_sigma_I()
String	getPdbx_method_to_determine_struct()
String	getPdbx_overall_ESU_R_Free()
String	getPdbx_overall_ESU_R()
String	getPdbx_overall_phase_error()
String	getPdbx_overall_SU_R_Blow_DPI()
String	getPdbx_overall_SU_R_free_Blow_DPI()
String	getPdbx_overall_SU_R_free_Cruickshank_DPI()
String	getPdbx_R_Free_selection_details()
String	getPdbx_refine_id()
String	getPdbx_solvent_ion_probe_radii()
String	getPdbx_solvent_shrinkage_radii()
String	getPdbx_solvent_vdw_probe_radii()
String	getPdbx_starting_model()
String	getPdbx_stereochem_target_val_spec_case()
String	getPdbx_stereochemistry_target_values()
String	getPdbx_TLS_residual_ADP_flag()
String	getSolvent_model_details()
String	getSolvent_model_param_bsol()
String	getSolvent_model_param_ksol()
void	setAniso_B(String[][] aniso_B)
void	setB_iso_max(String b_iso_max)
void	setB_iso_mean(String b_iso_mean)
void	setB_iso_min(String b_iso_min)
void	setCorrelation_coeff_Fo_to_Fc_free(String correlation_coeff_Fo_to_Fc_free)
void	setCorrelation_coeff_Fo_to_Fc(String correlation_coeff_Fo_to_Fc)
void	setDetails(String details)
void	setEntry_id(String entry_id)
void	setLs_d_res_high(String ls_d_res_high)
void	setLs_d_res_low(String ls_d_res_low)
void	setLs_matrix_type(String ls_matrix_type)
void	setLs_number_parameters(String ls_number_parameters)
void	setLs_number_reflns_all(String ls_number_reflns_all)
void	setLs_number_reflns_obs(String ls_number_reflns_obs)
void	setLs_number_reflns_R_free(String ls_number_reflns_R_free)
void	setLs_number_reflns_R_work(String ls_number_reflns_R_work)
void	setLs_number_restraints(String ls_number_restraints)
void	setLs_percent_reflns_obs(String ls_percent_reflns_obs)
void	setLs_percent_reflns_R_free(String ls_percent_reflns_R_free)
void	setLs_R_factor_all(String ls_R_factor_all)
void	setLs_R_factor_obs(String ls_R_factor_obs)
void	setLs_R_factor_R_free_error_details(String ls_R_factor_R_free_error_details)
void	setLs_R_factor_R_free_error(String ls_R_factor_R_free_error)
void	setLs_R_factor_R_free(String ls_R_factor_R_free)
void	setLs_R_factor_R_work(String ls_R_factor_R_work)
void	setLs_redundancy_reflns_obs(String ls_redundancy_reflns_obs)
void	setLs_wR_factor_R_free(String ls_wR_factor_R_free)
void	setLs_wR_factor_R_work(String ls_wR_factor_R_work)
void	setOccupancy_max(String occupancy_max)
void	setOccupancy_min(String occupancy_min)
void	setOverall_FOM_free_R_set(String overall_FOM_free_R_set)
void	setOverall_FOM_work_R_set(String overall_FOM_work_R_set)
void	setOverall_SU_B(String overall_SU_B)
void	setOverall_SU_ML(String overall_SU_ML)
void	setOverall_SU_R_Cruickshank_DPI(String overall_SU_R_Cruickshank_DPI)
void	setOverall_SU_R_free(String overall_SU_R_free)
void	setPdbx_data_cutoff_high_absF(String pdbx_data_cutoff_high_absF)
void	setPdbx_data_cutoff_high_rms_absF(String pdbx_data_cutoff_high_rms_absF)
void	setPdbx_data_cutoff_low_absF(String pdbx_data_cutoff_low_absF)
void	setPdbx_diffrn_id(String pdbx_diffrn_id)
void	setPdbx_isotropic_thermal_model(String pdbx_isotropic_thermal_model)
void	setPdbx_ls_cross_valid_method(String pdbx_ls_cross_valid_method)
void	setPdbx_ls_sigma_F(String pdbx_ls_sigma_F)
void	setPdbx_ls_sigma_I(String pdbx_ls_sigma_I)
void	setPdbx_method_to_determine_struct(String pdbx_method_to_determine_struct)
void	setPdbx_overall_ESU_R_Free(String pdbx_overall_ESU_R_Free)
void	setPdbx_overall_ESU_R(String pdbx_overall_ESU_R)
void	setPdbx_overall_phase_error(String pdbx_overall_phase_error)
void	setPdbx_overall_SU_R_Blow_DPI(String pdbx_overall_SU_R_Blow_DPI)
void	setPdbx_overall_SU_R_free_Blow_DPI(String pdbx_overall_SU_R_free_Blow_DPI)
void	setPdbx_overall_SU_R_free_Cruickshank_DPI(String pdbx_overall_SU_R_free_Cruickshank_DPI)
void	setPdbx_R_Free_selection_details(String pdbx_R_Free_selection_details)
void	setPdbx_refine_id(String pdbx_refine_id)
void	setPdbx_solvent_ion_probe_radii(String pdbx_solvent_ion_probe_radii)
void	setPdbx_solvent_shrinkage_radii(String pdbx_solvent_shrinkage_radii)
void	setPdbx_solvent_vdw_probe_radii(String pdbx_solvent_vdw_probe_radii)
void	setPdbx_starting_model(String pdbx_starting_model)
void	setPdbx_stereochem_target_val_spec_case(String pdbx_stereochem_target_val_spec_case)
void	setPdbx_stereochemistry_target_values(String pdbx_stereochemistry_target_values)
void	setPdbx_TLS_residual_ADP_flag(String pdbx_TLS_residual_ADP_flag)
void	setSolvent_model_details(String solvent_model_details)
void	setSolvent_model_param_bsol(String solvent_model_param_bsol)
void	setSolvent_model_param_ksol(String solvent_model_param_ksol)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Refine

public Refine()

Method Detail

getEntry_id

public String getEntry_id()

setEntry_id

public void setEntry_id(String entry_id)

getLs_number_reflns_obs

public String getLs_number_reflns_obs()

setLs_number_reflns_obs

public void setLs_number_reflns_obs(String ls_number_reflns_obs)

getLs_number_reflns_all

public String getLs_number_reflns_all()

setLs_number_reflns_all

public void setLs_number_reflns_all(String ls_number_reflns_all)

getPdbx_ls_sigma_I

public String getPdbx_ls_sigma_I()

setPdbx_ls_sigma_I

public void setPdbx_ls_sigma_I(String pdbx_ls_sigma_I)

getPdbx_ls_sigma_F

public String getPdbx_ls_sigma_F()

setPdbx_ls_sigma_F

public void setPdbx_ls_sigma_F(String pdbx_ls_sigma_F)

getPdbx_data_cutoff_high_absF

public String getPdbx_data_cutoff_high_absF()

setPdbx_data_cutoff_high_absF

public void setPdbx_data_cutoff_high_absF(String pdbx_data_cutoff_high_absF)

getPdbx_data_cutoff_low_absF

public String getPdbx_data_cutoff_low_absF()

setPdbx_data_cutoff_low_absF

public void setPdbx_data_cutoff_low_absF(String pdbx_data_cutoff_low_absF)

getPdbx_data_cutoff_high_rms_absF

public String getPdbx_data_cutoff_high_rms_absF()

setPdbx_data_cutoff_high_rms_absF

public void setPdbx_data_cutoff_high_rms_absF(String pdbx_data_cutoff_high_rms_absF)

getLs_d_res_low

public String getLs_d_res_low()

setLs_d_res_low

public void setLs_d_res_low(String ls_d_res_low)

getLs_d_res_high

public String getLs_d_res_high()

setLs_d_res_high

public void setLs_d_res_high(String ls_d_res_high)

getLs_percent_reflns_obs

public String getLs_percent_reflns_obs()

setLs_percent_reflns_obs

public void setLs_percent_reflns_obs(String ls_percent_reflns_obs)

getLs_R_factor_obs

public String getLs_R_factor_obs()

setLs_R_factor_obs

public void setLs_R_factor_obs(String ls_R_factor_obs)

getLs_R_factor_all

public String getLs_R_factor_all()

setLs_R_factor_all

public void setLs_R_factor_all(String ls_R_factor_all)

getLs_R_factor_R_work

public String getLs_R_factor_R_work()

setLs_R_factor_R_work

public void setLs_R_factor_R_work(String ls_R_factor_R_work)

getLs_R_factor_R_free

public String getLs_R_factor_R_free()

setLs_R_factor_R_free

public void setLs_R_factor_R_free(String ls_R_factor_R_free)

getLs_R_factor_R_free_error

public String getLs_R_factor_R_free_error()

setLs_R_factor_R_free_error

public void setLs_R_factor_R_free_error(String ls_R_factor_R_free_error)

getLs_R_factor_R_free_error_details

public String getLs_R_factor_R_free_error_details()

setLs_R_factor_R_free_error_details

public void setLs_R_factor_R_free_error_details(String ls_R_factor_R_free_error_details)

getLs_percent_reflns_R_free

public String getLs_percent_reflns_R_free()

setLs_percent_reflns_R_free

public void setLs_percent_reflns_R_free(String ls_percent_reflns_R_free)

getLs_number_reflns_R_free

public String getLs_number_reflns_R_free()

setLs_number_reflns_R_free

public void setLs_number_reflns_R_free(String ls_number_reflns_R_free)

getLs_number_parameters

public String getLs_number_parameters()

setLs_number_parameters

public void setLs_number_parameters(String ls_number_parameters)

getLs_number_restraints

public String getLs_number_restraints()

setLs_number_restraints

public void setLs_number_restraints(String ls_number_restraints)

getOccupancy_min

public String getOccupancy_min()

setOccupancy_min

public void setOccupancy_min(String occupancy_min)

getOccupancy_max

public String getOccupancy_max()

setOccupancy_max

public void setOccupancy_max(String occupancy_max)

getB_iso_mean

public String getB_iso_mean()

setB_iso_mean

public void setB_iso_mean(String b_iso_mean)

getAniso_B

public String[][] getAniso_B()

setAniso_B

public void setAniso_B(String[][] aniso_B)

getSolvent_model_details

public String getSolvent_model_details()

setSolvent_model_details

public void setSolvent_model_details(String solvent_model_details)

getSolvent_model_param_ksol

public String getSolvent_model_param_ksol()

setSolvent_model_param_ksol

public void setSolvent_model_param_ksol(String solvent_model_param_ksol)

getSolvent_model_param_bsol

public String getSolvent_model_param_bsol()

setSolvent_model_param_bsol

public void setSolvent_model_param_bsol(String solvent_model_param_bsol)

getPdbx_ls_cross_valid_method

public String getPdbx_ls_cross_valid_method()

setPdbx_ls_cross_valid_method

public void setPdbx_ls_cross_valid_method(String pdbx_ls_cross_valid_method)

getDetails

public String getDetails()

setDetails

public void setDetails(String details)

getPdbx_starting_model

public String getPdbx_starting_model()

setPdbx_starting_model

public void setPdbx_starting_model(String pdbx_starting_model)

getPdbx_method_to_determine_struct

public String getPdbx_method_to_determine_struct()

setPdbx_method_to_determine_struct

public void setPdbx_method_to_determine_struct(String pdbx_method_to_determine_struct)

getPdbx_isotropic_thermal_model

public String getPdbx_isotropic_thermal_model()

setPdbx_isotropic_thermal_model

public void setPdbx_isotropic_thermal_model(String pdbx_isotropic_thermal_model)

getPdbx_stereochemistry_target_values

public String getPdbx_stereochemistry_target_values()

setPdbx_stereochemistry_target_values

public void setPdbx_stereochemistry_target_values(String pdbx_stereochemistry_target_values)

getPdbx_stereochem_target_val_spec_case

public String getPdbx_stereochem_target_val_spec_case()

setPdbx_stereochem_target_val_spec_case

public void setPdbx_stereochem_target_val_spec_case(String pdbx_stereochem_target_val_spec_case)

getPdbx_R_Free_selection_details

public String getPdbx_R_Free_selection_details()

setPdbx_R_Free_selection_details

public void setPdbx_R_Free_selection_details(String pdbx_R_Free_selection_details)

getPdbx_overall_ESU_R

public String getPdbx_overall_ESU_R()

setPdbx_overall_ESU_R

public void setPdbx_overall_ESU_R(String pdbx_overall_ESU_R)

getPdbx_overall_ESU_R_Free

public String getPdbx_overall_ESU_R_Free()

setPdbx_overall_ESU_R_Free

public void setPdbx_overall_ESU_R_Free(String pdbx_overall_ESU_R_Free)

getOverall_SU_ML

public String getOverall_SU_ML()

setOverall_SU_ML

public void setOverall_SU_ML(String overall_SU_ML)

getOverall_SU_B

public String getOverall_SU_B()

setOverall_SU_B

public void setOverall_SU_B(String overall_SU_B)

getPdbx_refine_id

public String getPdbx_refine_id()

setPdbx_refine_id

public void setPdbx_refine_id(String pdbx_refine_id)

getLs_redundancy_reflns_obs

public String getLs_redundancy_reflns_obs()

setLs_redundancy_reflns_obs

public void setLs_redundancy_reflns_obs(String ls_redundancy_reflns_obs)

getPdbx_overall_phase_error

public String getPdbx_overall_phase_error()

setPdbx_overall_phase_error

public void setPdbx_overall_phase_error(String pdbx_overall_phase_error)

getB_iso_min

public String getB_iso_min()

setB_iso_min

public void setB_iso_min(String b_iso_min)

getB_iso_max

public String getB_iso_max()

setB_iso_max

public void setB_iso_max(String b_iso_max)

getCorrelation_coeff_Fo_to_Fc

public String getCorrelation_coeff_Fo_to_Fc()

setCorrelation_coeff_Fo_to_Fc

public void setCorrelation_coeff_Fo_to_Fc(String correlation_coeff_Fo_to_Fc)

getCorrelation_coeff_Fo_to_Fc_free

public String getCorrelation_coeff_Fo_to_Fc_free()

setCorrelation_coeff_Fo_to_Fc_free

public void setCorrelation_coeff_Fo_to_Fc_free(String correlation_coeff_Fo_to_Fc_free)

getPdbx_solvent_vdw_probe_radii

public String getPdbx_solvent_vdw_probe_radii()

setPdbx_solvent_vdw_probe_radii

public void setPdbx_solvent_vdw_probe_radii(String pdbx_solvent_vdw_probe_radii)

getPdbx_solvent_ion_probe_radii

public String getPdbx_solvent_ion_probe_radii()

setPdbx_solvent_ion_probe_radii

public void setPdbx_solvent_ion_probe_radii(String pdbx_solvent_ion_probe_radii)

getPdbx_solvent_shrinkage_radii

public String getPdbx_solvent_shrinkage_radii()

setPdbx_solvent_shrinkage_radii

public void setPdbx_solvent_shrinkage_radii(String pdbx_solvent_shrinkage_radii)

getOverall_SU_R_Cruickshank_DPI

public String getOverall_SU_R_Cruickshank_DPI()

setOverall_SU_R_Cruickshank_DPI

public void setOverall_SU_R_Cruickshank_DPI(String overall_SU_R_Cruickshank_DPI)

getOverall_SU_R_free

public String getOverall_SU_R_free()

setOverall_SU_R_free

public void setOverall_SU_R_free(String overall_SU_R_free)

getLs_wR_factor_R_free

public String getLs_wR_factor_R_free()

setLs_wR_factor_R_free

public void setLs_wR_factor_R_free(String ls_wR_factor_R_free)

getLs_wR_factor_R_work

public String getLs_wR_factor_R_work()

setLs_wR_factor_R_work

public void setLs_wR_factor_R_work(String ls_wR_factor_R_work)

getOverall_FOM_free_R_set

public String getOverall_FOM_free_R_set()

setOverall_FOM_free_R_set

public void setOverall_FOM_free_R_set(String overall_FOM_free_R_set)

getOverall_FOM_work_R_set

public String getOverall_FOM_work_R_set()

setOverall_FOM_work_R_set

public void setOverall_FOM_work_R_set(String overall_FOM_work_R_set)

getPdbx_diffrn_id

public String getPdbx_diffrn_id()

setPdbx_diffrn_id

public void setPdbx_diffrn_id(String pdbx_diffrn_id)

getPdbx_TLS_residual_ADP_flag

public String getPdbx_TLS_residual_ADP_flag()

setPdbx_TLS_residual_ADP_flag

public void setPdbx_TLS_residual_ADP_flag(String pdbx_TLS_residual_ADP_flag)

getPdbx_overall_SU_R_free_Cruickshank_DPI

public String getPdbx_overall_SU_R_free_Cruickshank_DPI()

setPdbx_overall_SU_R_free_Cruickshank_DPI

public void setPdbx_overall_SU_R_free_Cruickshank_DPI(String pdbx_overall_SU_R_free_Cruickshank_DPI)

getPdbx_overall_SU_R_Blow_DPI

public String getPdbx_overall_SU_R_Blow_DPI()

setPdbx_overall_SU_R_Blow_DPI

public void setPdbx_overall_SU_R_Blow_DPI(String pdbx_overall_SU_R_Blow_DPI)

getPdbx_overall_SU_R_free_Blow_DPI

public String getPdbx_overall_SU_R_free_Blow_DPI()

setPdbx_overall_SU_R_free_Blow_DPI

public void setPdbx_overall_SU_R_free_Blow_DPI(String pdbx_overall_SU_R_free_Blow_DPI)

getLs_matrix_type

public String getLs_matrix_type()

setLs_matrix_type

public void setLs_matrix_type(String ls_matrix_type)

getLs_number_reflns_R_work

public String getLs_number_reflns_R_work()

setLs_number_reflns_R_work

public void setLs_number_reflns_R_work(String ls_number_reflns_R_work)