Uses of Class
org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssembly

Packages that use PdbxStructAssembly

Package	Description
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.
org.biojava.nbio.structure.io.mmcif.model	Datamodel objects used for processing mmcif files.
org.biojava.nbio.structure.quaternary
org.biojava.nbio.structure.quaternary.io

Uses of PdbxStructAssembly in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif that return types with arguments of type PdbxStructAssembly

Modifier and Type	Method and Description
List<PdbxStructAssembly>	SimpleMMcifConsumer.getStructAssemblies()

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type PdbxStructAssembly

Modifier and Type	Method and Description
void	MMcifConsumer.newPdbxStrucAssembly(PdbxStructAssembly strucAssembly)
void	ChemCompConsumer.newPdbxStrucAssembly(PdbxStructAssembly strucAssembly)
void	SimpleMMcifConsumer.newPdbxStrucAssembly(PdbxStructAssembly strucAssembly)

Uses of PdbxStructAssembly in org.biojava.nbio.structure.io.mmcif.model

Methods in org.biojava.nbio.structure.io.mmcif.model that return types with arguments of type PdbxStructAssembly

Modifier and Type	Method and Description
List<PdbxStructAssembly>	PdbxStructAssemblyXMLContainer.getPdbxStructAssemblies()

Method parameters in org.biojava.nbio.structure.io.mmcif.model with type arguments of type PdbxStructAssembly

Modifier and Type	Method and Description
void	PdbxStructAssemblyXMLContainer.setPdbxStructAssemblies(List<PdbxStructAssembly> d)

Uses of PdbxStructAssembly in org.biojava.nbio.structure.quaternary

Methods in org.biojava.nbio.structure.quaternary with parameters of type PdbxStructAssembly

Modifier and Type	Method and Description
ArrayList<BiologicalAssemblyTransformation>	BiologicalAssemblyBuilder.getBioUnitTransformationList(PdbxStructAssembly psa, List<PdbxStructAssemblyGen> psags, List<PdbxStructOperList> operators) Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.

Uses of PdbxStructAssembly in org.biojava.nbio.structure.quaternary.io

Methods in org.biojava.nbio.structure.quaternary.io that return PdbxStructAssembly

Modifier and Type	Method and Description
PdbxStructAssembly	RawBioUnitDataProvider.getPdbxStructAssembly(int biolAssemblyNr) get the data for a particular pdbxStructAssembly.
PdbxStructAssembly	MmCifPDBBiolAssemblyProvider.getPdbxStructAssembly(int biolAssemblyNr)
PdbxStructAssembly	RemoteRawBioUnitDataProvider.getPdbxStructAssembly(int biolAssemblyNr)

Methods in org.biojava.nbio.structure.quaternary.io that return types with arguments of type PdbxStructAssembly

Modifier and Type	Method and Description
List<PdbxStructAssembly>	RawBioUnitDataProvider.getPdbxStructAssemblies() Data access method for list describing all assemblies
List<PdbxStructAssembly>	MmCifPDBBiolAssemblyProvider.getPdbxStructAssemblies()
List<PdbxStructAssembly>	RemoteRawBioUnitDataProvider.getPdbxStructAssemblies()