Hierarchy For Package org.biojava.nbio.structure

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.structure.AtomImpl (implements org.biojava.nbio.structure.Atom, org.biojava.nbio.structure.PDBRecord, java.io.Serializable)
  • org.biojava.nbio.structure.AtomIterator (implements java.util.Iterator<E>)
  • org.biojava.nbio.structure.AtomPositionMap
  • org.biojava.nbio.structure.Author (implements java.io.Serializable)
  • org.biojava.nbio.structure.BioAssemblyIdentifier (implements org.biojava.nbio.structure.StructureIdentifier)
  • org.biojava.nbio.structure.BondImpl (implements org.biojava.nbio.structure.Bond, java.io.Serializable)
  • org.biojava.nbio.structure.Calc
  • org.biojava.nbio.structure.ChainImpl (implements org.biojava.nbio.structure.Chain, java.io.Serializable)
  • org.biojava.nbio.structure.Compound (implements java.io.Serializable)
  • org.biojava.nbio.structure.DBRef (implements org.biojava.nbio.structure.PDBRecord, java.io.Serializable)
  • org.biojava.nbio.structure.GroupIterator (implements java.util.Iterator<E>)
  • org.biojava.nbio.structure.HetatomImpl (implements org.biojava.nbio.structure.Group, java.io.Serializable)
    • org.biojava.nbio.structure.AminoAcidImpl (implements org.biojava.nbio.structure.AminoAcid, java.io.Serializable)
    • org.biojava.nbio.structure.NucleotideImpl (implements java.lang.Cloneable, org.biojava.nbio.structure.Group, java.io.Serializable)
  • org.biojava.nbio.structure.Identifier
  • org.biojava.nbio.structure.JournalArticle (implements java.io.Serializable)
  • org.biojava.nbio.structure.Mutator
  • org.biojava.nbio.structure.PassthroughIdentifier (implements org.biojava.nbio.structure.StructureIdentifier)
  • org.biojava.nbio.structure.PDBCrystallographicInfo (implements java.io.Serializable)
  • org.biojava.nbio.structure.PDBHeader (implements org.biojava.nbio.structure.PDBRecord, java.io.Serializable)
  • org.biojava.nbio.structure.PDBStatus
  • org.biojava.nbio.structure.ResidueNumber (implements java.lang.Comparable<T>, java.io.Serializable)
  • org.biojava.nbio.structure.ResidueRange
    • org.biojava.nbio.structure.ResidueRangeAndLength
      • org.biojava.nbio.structure.AugmentedResidueRange
  • org.biojava.nbio.structure.SeqMisMatchImpl (implements org.biojava.nbio.structure.SeqMisMatch, java.io.Serializable)
  • org.biojava.nbio.structure.Site (implements java.lang.Comparable<T>, org.biojava.nbio.structure.PDBRecord, java.io.Serializable)
  • org.biojava.nbio.structure.StandardAminoAcid
  • org.biojava.nbio.structure.StructureImpl (implements java.io.Serializable, org.biojava.nbio.structure.Structure)
  • org.biojava.nbio.structure.StructureIO
  • org.biojava.nbio.structure.StructureTools
  • org.biojava.nbio.structure.SubstructureIdentifier (implements java.io.Serializable, org.biojava.nbio.structure.StructureIdentifier)
  • org.biojava.nbio.structure.SVDSuperimposer
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.biojava.nbio.structure.StructureException
  • org.biojava.nbio.structure.URLIdentifier (implements org.biojava.nbio.structure.StructureIdentifier)

Interface Hierarchy

• org.biojava.nbio.structure.AtomPositionMap.GroupMatcher
• org.biojava.nbio.structure.Bond
• org.biojava.nbio.structure.Chain
• java.lang.Cloneable
  • org.biojava.nbio.structure.Atom (also extends org.biojava.nbio.structure.PDBRecord)
  • org.biojava.nbio.structure.Structure
• org.biojava.nbio.structure.Group
  • org.biojava.nbio.structure.AminoAcid
• org.biojava.nbio.structure.PDBRecord
  • org.biojava.nbio.structure.Atom (also extends java.lang.Cloneable)
• org.biojava.nbio.structure.SeqMisMatch
• org.biojava.nbio.structure.StructureIdentifier

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.structure.BondType
    • org.biojava.nbio.structure.Element (implements java.io.Serializable)
    • org.biojava.nbio.structure.ElementType (implements java.io.Serializable)
    • org.biojava.nbio.structure.ExperimentalTechnique
    • org.biojava.nbio.structure.GroupType
    • org.biojava.nbio.structure.HetatomImpl.PerformanceBehavior
    • org.biojava.nbio.structure.PDBStatus.Status
    • org.biojava.nbio.structure.StructureIO.StructureFiletype