org.biojava.nbio.structure.symmetry.core

Class HelixLayers

java.lang.Object

org.biojava.nbio.structure.symmetry.core.HelixLayers

public class HelixLayers
extends Object

Author:

Peter

Constructor Summary

Constructors

Constructor and Description
HelixLayers()

Method Summary

Modifier and Type	Method and Description
void	addHelix(Helix helix)
void	clear()
Helix	getByLargestContacts()
Helix	getByLargestContactsNotLowestAngle()
Helix	getByLowestAngle()
Helix	getHelix(int index)
QuatSymmetryScores	getScores() Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)
void	setSymmetryDeviation(double symmetryDeviation)
int	size()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

HelixLayers

public HelixLayers()

Method Detail

size

public int size()

addHelix

public void addHelix(Helix helix)

getHelix

public Helix getHelix(int index)

getByLowestAngle

public Helix getByLowestAngle()

getByLargestContacts

public Helix getByLargestContacts()

getByLargestContactsNotLowestAngle

public Helix getByLargestContactsNotLowestAngle()

getScores

public QuatSymmetryScores getScores()

Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)

Returns:

mean scores average over rotations

setSymmetryDeviation

public void setSymmetryDeviation(double symmetryDeviation)

Parameters:

symmetryDeviation - the symmetryDeviation to set

clear

public void clear()

toString

public String toString()

Overrides:

toString in class Object