Constructor and Description |
---|
UniqueSequenceList(Atom[] cAlphaAtoms,
String chainId,
int modelNumber,
int structureId,
String seqResSequence) |
Modifier and Type | Method and Description |
---|---|
Object |
clone() |
List<Integer> |
getAlignment1() |
List<Integer> |
getAlignment2() |
Atom[] |
getCalphaAtoms() |
String |
getChainId() |
int |
getModelNumber() |
String |
getSeqResSequence() |
static String |
getSequenceString(Atom[] caAlphaAtoms) |
int |
getStructureId() |
boolean |
isMatch(Atom[] caAlphaAtoms)
Return true is the sequence and residues numbers of the passed in array of
atoms matches those of this unique sequence list
|
void |
setAlignment1(List<Integer> alignment1) |
void |
setAlignment2(List<Integer> alignment2) |
void |
setSequenceString(String sequenceString) |
String |
toString() |
public boolean isMatch(Atom[] caAlphaAtoms)
caAlphaAtoms
- public String getChainId()
public int getModelNumber()
public int getStructureId()
public Atom[] getCalphaAtoms()
public String getSeqResSequence()
public void setSequenceString(String sequenceString)
sequenceString
- the sequenceString to setpublic void setAlignment1(List<Integer> alignment1)
alignment1
- the alignment1 to setpublic void setAlignment2(List<Integer> alignment2)
alignment2
- the alignment2 to setCopyright © 2000–2016 BioJava. All rights reserved.