Uses of Class
org.biojava.nbio.structure.xtal.SpaceGroup

Packages that use SpaceGroup

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.
org.biojava.nbio.structure.xtal
org.biojava.nbio.structure.xtal.io

Uses of SpaceGroup in org.biojava.nbio.structure

Methods in org.biojava.nbio.structure that return SpaceGroup

Modifier and Type	Method and Description
SpaceGroup	PDBCrystallographicInfo.getSpaceGroup() Get the SpaceGroup

Methods in org.biojava.nbio.structure with parameters of type SpaceGroup

Modifier and Type	Method and Description
void	PDBCrystallographicInfo.setSpaceGroup(SpaceGroup spaceGroup) Set the SpaceGroup

Uses of SpaceGroup in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type SpaceGroup

Modifier and Type	Method and Description
static Symmetry	MMCIFFileTools.convertSpaceGroupToSymmetry(SpaceGroup sg) Converts a SpaceGroup object to a Symmetry object.

Uses of SpaceGroup in org.biojava.nbio.structure.xtal

Methods in org.biojava.nbio.structure.xtal that return SpaceGroup

Modifier and Type	Method and Description
static SpaceGroup	SymoplibParser.getSpaceGroup(int id) Gets the space group for the given standard identifier.
static SpaceGroup	SymoplibParser.getSpaceGroup(String shortName) Get the space group for the given international short name, using the PDB format, e.g.
static SpaceGroup	SpaceGroup.parseSpaceGroup(String shortName) Get the space group for the given international short name, using the PDB format, e.g.

Methods in org.biojava.nbio.structure.xtal that return types with arguments of type SpaceGroup

Modifier and Type	Method and Description
static TreeMap<Integer,SpaceGroup>	SymoplibParser.getAllSpaceGroups()
static TreeMap<Integer,SpaceGroup>	SymoplibParser.parseSpaceGroupsXML(InputStream spaceGroupIS) Load all SpaceGroup information from the file spacegroups.xml
static TreeMap<Integer,SpaceGroup>	SymoplibParser.parseSymopLib(InputStream symoplibIS) A parser for the symop.lib file provided by CCP4.

Constructors in org.biojava.nbio.structure.xtal with parameters of type SpaceGroup

Constructor and Description
CrystalTransform(SpaceGroup sg) Creates a new CrystalTransform representing the identity transform in cell (0,0,0)
CrystalTransform(SpaceGroup sg, int transformId) Represents the n-th transform

Uses of SpaceGroup in org.biojava.nbio.structure.xtal.io

Fields in org.biojava.nbio.structure.xtal.io declared as SpaceGroup

Modifier and Type	Field and Description
SpaceGroup	SpaceGroupMapElements.value

Methods in org.biojava.nbio.structure.xtal.io that return types with arguments of type SpaceGroup

Modifier and Type	Method and Description
TreeMap<Integer,SpaceGroup>	TreeMapSpaceGroupWrapper.getData()
TreeMap<Integer,SpaceGroup>	SpaceGroupMapRoot.getMapProperty()

Method parameters in org.biojava.nbio.structure.xtal.io with type arguments of type SpaceGroup

Modifier and Type	Method and Description
void	TreeMapSpaceGroupWrapper.setData(TreeMap<Integer,SpaceGroup> data)
void	SpaceGroupMapRoot.setMapProperty(TreeMap<Integer,SpaceGroup> map)

Constructors in org.biojava.nbio.structure.xtal.io with parameters of type SpaceGroup

Constructor and Description
SpaceGroupMapElements(Integer key, SpaceGroup value)