org.biojava.nbio.alignment.routines

Enum AlignerHelper.Last

java.lang.Object

java.lang.Enum<AlignerHelper.Last>

org.biojava.nbio.alignment.routines.AlignerHelper.Last

All Implemented Interfaces:

Serializable, Comparable<AlignerHelper.Last>

Enclosing class:

AlignerHelper

public static enum AlignerHelper.Last
extends Enum<AlignerHelper.Last>

Define a traceback pointer for the three edit operations: substitution (match/replacement of a query compound with a target compound), deletion (removal of a query compound leaving a gap in the target sequence), and insertion (addition of a target compound opening a gap in the query sequence).

Enum Constant Summary

Enum Constants

Enum Constant and Description
DELETION
INSERTION
SUBSTITUTION

Method Summary

Modifier and Type	Method and Description
static AlignerHelper.Last	valueOf(String name) Returns the enum constant of this type with the specified name.
static AlignerHelper.Last[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

SUBSTITUTION

public static final AlignerHelper.Last SUBSTITUTION

DELETION

public static final AlignerHelper.Last DELETION

INSERTION

public static final AlignerHelper.Last INSERTION

Method Detail

values

public static AlignerHelper.Last[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AlignerHelper.Last c : AlignerHelper.Last.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AlignerHelper.Last valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null