Hierarchy For Package org.biojava.nbio.alignment.routines

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.alignment.template.AbstractScorer (implements org.biojava.nbio.alignment.template.Scorer)
    • org.biojava.nbio.alignment.template.AbstractMatrixAligner<S,C> (implements org.biojava.nbio.alignment.template.MatrixAligner<S,C>)
      • org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner<S,C> (implements org.biojava.nbio.alignment.template.PairwiseSequenceAligner<S,C>)
        • org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner<S,C>
          • org.biojava.nbio.alignment.routines.GuanUberbacher<S,C>
  • org.biojava.nbio.alignment.routines.AlignerHelper
  • org.biojava.nbio.alignment.routines.AlignerHelper.Anchor
  • org.biojava.nbio.alignment.routines.AlignerHelper.Anchor.QueryIndexComparator (implements java.util.Comparator<T>, java.io.Serializable)
  • org.biojava.nbio.alignment.routines.AlignerHelper.Cut
  • org.biojava.nbio.alignment.routines.AlignerHelper.Subproblem

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.alignment.routines.AlignerHelper.Last