org.biojava.nbio.core.sequence.io

Class GenbankWriter<S extends Sequence<?>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.io.GenbankWriter<S,C>

public class GenbankWriter<S extends Sequence<?>,C extends Compound>
extends Object

Author:

mckeee1

Constructor Summary

Constructors

Constructor and Description
GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat) Use default line length of 60
GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat, int lineLength) Set custom lineLength

Method Summary

Modifier and Type	Method and Description
int	getLineLength()
void	process() Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option
void	setLineLength(int lineLength)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenbankWriter

public GenbankWriter(OutputStream os,
                     Collection<S> sequences,
                     GenbankHeaderFormatInterface<S,C> headerFormat)

Use default line length of 60

Parameters:

os -

sequences -

headerFormat -

GenbankWriter

public GenbankWriter(OutputStream os,
                     Collection<S> sequences,
                     GenbankHeaderFormatInterface<S,C> headerFormat,
                     int lineLength)

Set custom lineLength

Parameters:

os -

sequences -

headerFormat -

lineLength -

Method Detail

process

public void process()
             throws Exception

Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option

Parameters:

lineSeparator -

Throws:

Exception

getLineLength

public int getLineLength()

Returns:

the lineLength

setLineLength

public void setLineLength(int lineLength)

Parameters:

lineLength - the lineLength to set