org.biojava.nbio.core.sequence.io

Class GenericInsdcHeaderFormat<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat<S,C>

Direct Known Subclasses:

GenericGenbankHeaderFormat

public class GenericInsdcHeaderFormat<S extends AbstractSequence<C>,C extends Compound>
extends Object

Author:

mckeee1

Field Summary

Fields

Modifier and Type	Field and Description
protected static int	MAX_WIDTH
protected static int	QUALIFIER_INDENT
protected static String	QUALIFIER_INDENT_STR
protected static String	QUALIFIER_INDENT_TMP

Constructor Summary

Constructors

Constructor and Description
GenericInsdcHeaderFormat()

Method Summary

Modifier and Type	Method and Description
protected ArrayList<String>	_split_multi_line(String text, int max_len) Returns a list of strings.
protected String	_write_feature(FeatureInterface<AbstractSequence<C>,C> feature, int record_length) Write a single SeqFeature object to features table.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MAX_WIDTH

protected static final int MAX_WIDTH

See Also:

Constant Field Values

QUALIFIER_INDENT

protected static final int QUALIFIER_INDENT

See Also:

Constant Field Values

QUALIFIER_INDENT_STR

protected static final String QUALIFIER_INDENT_STR

See Also:

Constant Field Values

QUALIFIER_INDENT_TMP

protected static final String QUALIFIER_INDENT_TMP

See Also:

Constant Field Values

Constructor Detail

GenericInsdcHeaderFormat

public GenericInsdcHeaderFormat()

Method Detail

_write_feature

protected String _write_feature(FeatureInterface<AbstractSequence<C>,C> feature,
                                int record_length)

Write a single SeqFeature object to features table.

Parameters:

feature -

record_length -

_split_multi_line

protected ArrayList<String> _split_multi_line(String text,
                                              int max_len)

Returns a list of strings. Any single words which are too long get returned as a whole line (e.g. URLs) without an exception or warning.

Parameters:

text -

max_len -