org.biojava.nbio.core.sequence.io

Class PlainFastaHeaderParser<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.io.PlainFastaHeaderParser<S,C>

All Implemented Interfaces:

SequenceHeaderParserInterface<S,C>

public class PlainFastaHeaderParser<S extends AbstractSequence<C>,C extends Compound>
extends Object
implements SequenceHeaderParserInterface<S,C>

The plain fasta header takes everything in the header as a single entity. It is useful for non-standard header formats that don't follow a single rule.
If the user has a custom header with local data that is kept constant all over the data then they can create their own implementation of a FastaHeaderParserInterface

Since:

3.0.6

Author:

Amr AL-Hossary

Constructor Summary

Constructors

Constructor and Description
PlainFastaHeaderParser()

Method Summary

Modifier and Type	Method and Description
void	parseHeader(String header, S sequence) Parse the header and set the values in the sequence

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PlainFastaHeaderParser

public PlainFastaHeaderParser()

Method Detail

parseHeader

public void parseHeader(String header,
                        S sequence)

Parse the header and set the values in the sequence

Specified by:

parseHeader in interface SequenceHeaderParserInterface<S extends AbstractSequence<C>,C extends Compound>

Parameters:

header -

sequence -