Uses of Package
org.biojava.nbio.core.sequence.transcription

Packages that use org.biojava.nbio.core.sequence.transcription

Package	Description
org.biojava.nbio.core.sequence
org.biojava.nbio.core.sequence.io
org.biojava.nbio.core.sequence.transcription

Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence

Class and Description
Frame Indicates a way of translating a sequence.
TranscriptionEngine Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.

Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence.io

Class and Description
Table Provides a way of separating us from the specific IUPACParser.IUPACTable even though this is the only implementing class for the interface.
Table.Codon Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon.

Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence.transcription

Class and Description
DNAToRNATranslator Performs the first stage of transcription by going from DNA to RNA.
Frame Indicates a way of translating a sequence.
RNAToAminoAcidTranslator Takes a Sequence of NucleotideCompound which should represent an RNA sequence (RNASequence is good for this) and returns a list of Sequence which hold AminoAcidCompound.
Table Provides a way of separating us from the specific IUPACParser.IUPACTable even though this is the only implementing class for the interface.
Table.CaseInsensitiveTriplet Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.
Table.Codon Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon.
TranscriptionEngine Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.
TranscriptionEngine.Builder This class is the way to create a TranslationEngine.