Package org.biojava.nbio.core.sequence.transcription

Interface Summary

Interface	Description
Table	Provides a way of separating us from the specific IUPACParser.IUPACTable even though this is the only implementing class for the interface.

Class Summary

Class	Description
CaseInsensitiveCompound	Attempts to wrap compounds so it is possible to view them in a case insensitive manner
DNAToRNATranslator	Performs the first stage of transcription by going from DNA to RNA.
RNAToAminoAcidTranslator	Takes a Sequence of NucleotideCompound which should represent an RNA sequence (RNASequence is good for this) and returns a list of Sequence which hold AminoAcidCompound.
Table.CaseInsensitiveTriplet	Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.
Table.Codon	Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon.
TranscriptionEngine	Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.
TranscriptionEngine.Builder	This class is the way to create a TranslationEngine.

Enum Summary

Enum	Description
Frame	Indicates a way of translating a sequence.