Uses of Class
org.biojava.nbio.structure.align.StructurePairAligner

Packages that use StructurePairAligner

Package	Description
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.

Uses of StructurePairAligner in org.biojava.nbio.structure.gui

Methods in org.biojava.nbio.structure.gui that return StructurePairAligner

Modifier and Type	Method and Description
StructurePairAligner	SequenceDisplay.getStructurePairAligner()

Methods in org.biojava.nbio.structure.gui with parameters of type StructurePairAligner

Modifier and Type	Method and Description
void	SequenceDisplay.setStructurePairAligner(StructurePairAligner structurePairAligner)

Constructors in org.biojava.nbio.structure.gui with parameters of type StructurePairAligner

Constructor and Description
SequenceDisplay(StructurePairAligner structurePairAligner)

Uses of StructurePairAligner in org.biojava.nbio.structure.gui.events

Constructors in org.biojava.nbio.structure.gui.events with parameters of type StructurePairAligner

Constructor and Description
JmolAlignedPositionListener(BiojavaJmol parent, StructurePairAligner alig)

Uses of StructurePairAligner in org.biojava.nbio.structure.gui.util

Methods in org.biojava.nbio.structure.gui.util with parameters of type StructurePairAligner

Modifier and Type	Method and Description
void	AlternativeAlignmentFrame.setStructurePairAligner(StructurePairAligner aligner)