org.biojava.nbio.structure.align.multiple.util

Class MultipleAlignmentDisplay

java.lang.Object

org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay

public class MultipleAlignmentDisplay
extends Object

Utility functions to generalize the visualization of MultipleAlignments in molecular viewers. The methods return different types of selectors for the aligned residues in the alignment.

Since:

4.2.0

Author:

Andreas Prlic, Aleix Lafita, Spencer Bliven

Constructor Summary

Constructors

Constructor and Description
MultipleAlignmentDisplay()

Method Summary

Modifier and Type	Method and Description
static List<Atom[]>	getRotatedAtoms(MultipleAlignment multAln) New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MultipleAlignmentDisplay

public MultipleAlignmentDisplay()

Method Detail

getRotatedAtoms

public static List<Atom[]> getRotatedAtoms(MultipleAlignment multAln)
                                    throws StructureException

New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.

Parameters:

multAln -

Returns:

list of transformed AtomArrays

Throws:

StructureException