Package org.biojava.nbio.structure.align.multiple.util

Interface Summary

Interface	Description
MultipleSuperimposer	Interface for Multiple Alignment superposition algorithms.

Class Summary

Class	Description
CoreSuperimposer	Superimposes the core aligned residues of every structure in a MultipleAlignment onto a reference structure.
MultipleAlignmentDisplay	Utility functions to generalize the visualization of MultipleAlignments in molecular viewers.
MultipleAlignmentScorer	Utility class for calculating common scores of MultipleAlignments.
MultipleAlignmentTools	Utility functions for working with MultipleAlignment.
MultipleAlignmentWriter	This class contains functions for the conversion of MultipleAlignment to various String outputs.
ReferenceSuperimposer	Superimposes each structure in a MultipleAlignment onto a reference structure.