Uses of Class
org.biojava.nbio.structure.align.util.UserConfiguration

Packages that use UserConfiguration

Package	Description
org.biojava.nbio.structure.align.gui
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.align.webstart	Classes related to Java Web Start

Uses of UserConfiguration in org.biojava.nbio.structure.align.gui

Methods in org.biojava.nbio.structure.align.gui with parameters of type UserConfiguration

Modifier and Type	Method and Description
void	DBResultTable.show(BufferedReader in, UserConfiguration config)
void	DBResultTable.show(File file, UserConfiguration config)
void	DBResultTable.show(URL url, UserConfiguration config)

Constructors in org.biojava.nbio.structure.align.gui with parameters of type UserConfiguration

Constructor and Description
AlignmentCalcDB(AlignmentGui parent, Structure s1, String name1, UserConfiguration config, String outFile, Boolean domainSplit)
ChooseDirAction(JTextField textField, UserConfiguration config)

Uses of UserConfiguration in org.biojava.nbio.structure.align.util

Methods in org.biojava.nbio.structure.align.util that return UserConfiguration

Modifier and Type	Method and Description
static UserConfiguration	UserConfiguration.fromStartupParams(StartupParameters params)

Constructors in org.biojava.nbio.structure.align.util with parameters of type UserConfiguration

Constructor and Description
AtomCache(UserConfiguration config) Creates a new AtomCache object based on the provided UserConfiguration.

Uses of UserConfiguration in org.biojava.nbio.structure.align.webstart

Methods in org.biojava.nbio.structure.align.webstart that return UserConfiguration

Modifier and Type	Method and Description
UserConfiguration	ConfigXMLHandler.getConfig()
static UserConfiguration	WebStartMain.getDefaultConfig()
static UserConfiguration	WebStartMain.getWebStartConfig()
static UserConfiguration	WebStartMain.requestUserConfig()