Uses of Class
org.biojava.nbio.structure.gui.util.AlignedPosition

Packages that use AlignedPosition

Package	Description
org.biojava.nbio.structure.align.gui.aligpanel
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.

Uses of AlignedPosition in org.biojava.nbio.structure.align.gui.aligpanel

Methods in org.biojava.nbio.structure.align.gui.aligpanel with parameters of type AlignedPosition

Modifier and Type	Method and Description
void	StatusDisplay.mouseOverPosition(AlignedPosition p)
void	AligPanel.mouseOverPosition(AlignedPosition p)
void	MultipleAligPanel.mouseOverPosition(AlignedPosition p)
void	MultipleStatusDisplay.mouseOverPosition(AlignedPosition p)
void	StatusDisplay.positionSelected(AlignedPosition p)
void	AligPanel.positionSelected(AlignedPosition p)
void	MultipleAligPanel.positionSelected(AlignedPosition p)
void	MultipleStatusDisplay.positionSelected(AlignedPosition p)
void	StatusDisplay.rangeSelected(AlignedPosition start, AlignedPosition end)
void	AligPanel.rangeSelected(AlignedPosition start, AlignedPosition end)
void	MultipleAligPanel.rangeSelected(AlignedPosition start, AlignedPosition end)
void	MultipleStatusDisplay.rangeSelected(AlignedPosition start, AlignedPosition end)
void	StatusDisplay.toggleSelection(AlignedPosition p)
void	AligPanel.toggleSelection(AlignedPosition p)
void	MultipleAligPanel.toggleSelection(AlignedPosition p)
void	MultipleStatusDisplay.toggleSelection(AlignedPosition p)

Uses of AlignedPosition in org.biojava.nbio.structure.gui

Methods in org.biojava.nbio.structure.gui that return types with arguments of type AlignedPosition

Modifier and Type	Method and Description
List<AlignedPosition>	SequenceDisplay.getAligMap()

Uses of AlignedPosition in org.biojava.nbio.structure.gui.events

Methods in org.biojava.nbio.structure.gui.events with parameters of type AlignedPosition

Modifier and Type	Method and Description
void	AlignmentPositionListener.mouseOverPosition(AlignedPosition p)
void	JmolAlignedPositionListener.mouseOverPosition(AlignedPosition p)
void	AlignmentPositionListener.positionSelected(AlignedPosition p)
void	JmolAlignedPositionListener.positionSelected(AlignedPosition p)
void	AlignmentPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)
void	JmolAlignedPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)
void	AlignmentPositionListener.toggleSelection(AlignedPosition p)
void	JmolAlignedPositionListener.toggleSelection(AlignedPosition p)

Uses of AlignedPosition in org.biojava.nbio.structure.gui.util

Method parameters in org.biojava.nbio.structure.gui.util with type arguments of type AlignedPosition

Modifier and Type	Method and Description
void	SequenceScalePanel.setAligMap(List<AlignedPosition> apos)