Uses of Class
org.biojava.nbio.structure.io.mmcif.model.ChemComp

Packages that use ChemComp

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.
org.biojava.nbio.structure.io.mmcif.chem
org.biojava.nbio.structure.io.mmcif.model	Datamodel objects used for processing mmcif files.

Uses of ChemComp in org.biojava.nbio.structure

Fields in org.biojava.nbio.structure declared as ChemComp

Modifier and Type	Field and Description
protected ChemComp	HetatomImpl.chemComp

Methods in org.biojava.nbio.structure that return ChemComp

Modifier and Type	Method and Description
ChemComp	Group.getChemComp() Get the chemical component that closer describes this group.
ChemComp	HetatomImpl.getChemComp()

Methods in org.biojava.nbio.structure with parameters of type ChemComp

Modifier and Type	Method and Description
void	Group.setChemComp(ChemComp cc) Set the Chemical Component that closer describes this group.
void	HetatomImpl.setChemComp(ChemComp cc)

Uses of ChemComp in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif that return ChemComp

Modifier and Type	Method and Description
ChemComp	AllChemCompProvider.getChemComp(String recordName) Returns a new instance of a chemical component definition.
ChemComp	ReducedChemCompProvider.getChemComp(String recordName)
static ChemComp	ChemCompGroupFactory.getChemComp(String recordName)
ChemComp	ChemCompProvider.getChemComp(String recordName) Returns a new instance of a chemical component definition.
ChemComp	DownloadChemCompProvider.getChemComp(String recordName) Loads the definitions for this ChemComp from a local file and instantiates a new object.
ChemComp	ChemicalComponentDictionary.getChemComp(String id)
ChemComp	ZipChemCompProvider.getChemComp(String recordName)
ChemComp	ChemicalComponentDictionary.getParent(ChemComp c) Get the parent of a component.
ChemComp	ChemicalComponentDictionary.getReplaced(ChemComp c) if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.
ChemComp	ChemicalComponentDictionary.getReplaced(String id)
ChemComp	ChemicalComponentDictionary.getReplacer(ChemComp c) if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.
ChemComp	ChemicalComponentDictionary.getReplacer(String id)

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type ChemComp

Modifier and Type	Method and Description
void	ChemicalComponentDictionary.addChemComp(ChemComp comp) add a new component to the dictionary
static String	ChemCompGroupFactory.getOneLetterCode(ChemComp cc)
ChemComp	ChemicalComponentDictionary.getParent(ChemComp c) Get the parent of a component.
ChemComp	ChemicalComponentDictionary.getReplaced(ChemComp c) if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.
ChemComp	ChemicalComponentDictionary.getReplacer(ChemComp c) if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.
boolean	ChemicalComponentDictionary.isReplaced(ChemComp c)
boolean	ChemicalComponentDictionary.isReplacer(ChemComp c)
void	MMcifConsumer.newChemComp(ChemComp c)
void	ChemCompConsumer.newChemComp(ChemComp c)
void	MetalBondConsumer.newChemComp(ChemComp c)
void	SimpleMMcifConsumer.newChemComp(ChemComp c)
void	SimpleMMcifParser.triggerNewChemComp(ChemComp cc)

Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.chem

Methods in org.biojava.nbio.structure.io.mmcif.chem with parameters of type ChemComp

Modifier and Type	Method and Description
static Character	ChemCompTools.getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)
static boolean	ChemCompTools.isStandardChemComp(ChemComp cc)

Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.model

Methods in org.biojava.nbio.structure.io.mmcif.model that return ChemComp

Modifier and Type	Method and Description
static ChemComp	ChemComp.getEmptyChemComp() Creates a new instance of the dummy empty ChemComp.

Methods in org.biojava.nbio.structure.io.mmcif.model with parameters of type ChemComp

Modifier and Type	Method and Description
int	ChemComp.compareTo(ChemComp arg0)