org.biojava.nbio.structure.symmetry.core

Class QuatSuperpositionScorer

java.lang.Object

org.biojava.nbio.structure.symmetry.core.QuatSuperpositionScorer

public class QuatSuperpositionScorer
extends Object

Author:

Peter

Constructor Summary

Constructors

Constructor and Description
QuatSuperpositionScorer()

Method Summary

Modifier and Type	Method and Description
static QuatSymmetryScores	calcScores(QuatSymmetrySubunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation) Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QuatSuperpositionScorer

public QuatSuperpositionScorer()

Method Detail

calcScores

public static QuatSymmetryScores calcScores(QuatSymmetrySubunits subunits,
                                            javax.vecmath.Matrix4d transformation,
                                            List<Integer> permutation)

Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)

Parameters:

subunits - subunits to be scored

transformation - transformation matrix

permutations - permutation that determines which subunits are superposed

Returns: