Package org.biojava.nbio.structure.symmetry.core

Interface Summary

Interface	Description
QuatSymmetrySolver

Class Summary

Class	Description
C2RotationSolver
HelicalRepeatUnit
Helix
HelixExtender
HelixLayers
HelixSolver
PermutationGroup
QuatSuperpositionScorer
QuatSymmetryDetector	Detects the symmetry (global, pseudo, internal and local) of protein structures.
QuatSymmetryParameters	The QuatSymmetryParameters specify the options used for the detection of quaternary symmetry in structures using the QuatSymmetryDetector.
QuatSymmetryResults	Holds the results of quaternary symmetry perception obtained with QuatSymmetryDetector.
QuatSymmetryScores
QuatSymmetrySubunits	A bean to represent information about the set of Subunit being considered for symmetry detection.
Rotation
RotationGroup
RotationSolver
Stoichiometry	A utility object that describes Stoichiometry (composition of a protein assembly), determined via clustering procedure SubunitClusterer, and implements human-readable representation using various strategies.
SystematicSolver

Enum Summary

Enum	Description
Stoichiometry.StringOverflowStrategy	What to do when the number of SubunitCluster exceeds the length of the alphabet.
SymmetryPerceptionMethod	Method used for symmetry perception in the QuatSymmetryDetector.