Uses of Class
org.biojava.nbio.structure.symmetry.core.QuatSymmetryResults

Packages that use QuatSymmetryResults

Package	Description
org.biojava.nbio.structure.symmetry.axis
org.biojava.nbio.structure.symmetry.core
org.biojava.nbio.structure.symmetry.utils

Uses of QuatSymmetryResults in org.biojava.nbio.structure.symmetry.axis

Methods in org.biojava.nbio.structure.symmetry.axis with parameters of type QuatSymmetryResults

Modifier and Type	Method and Description
static AxisAligner	AxisAligner.getInstance(QuatSymmetryResults results) Returns an instance of AxisAligner for differnt type of QuatSymmetryResults (factory method)

Constructors in org.biojava.nbio.structure.symmetry.axis with parameters of type QuatSymmetryResults

Constructor and Description
HelixAxisAligner(QuatSymmetryResults results)
RotationAxisAligner(QuatSymmetryResults results)

Uses of QuatSymmetryResults in org.biojava.nbio.structure.symmetry.core

Methods in org.biojava.nbio.structure.symmetry.core that return QuatSymmetryResults

Modifier and Type	Method and Description
static QuatSymmetryResults	QuatSymmetryDetector.calcGlobalSymmetry(List<Subunit> subunits, QuatSymmetryParameters symmParams, SubunitClustererParameters clusterParams) Calculate GLOBAL symmetry results.
static QuatSymmetryResults	QuatSymmetryDetector.calcGlobalSymmetry(Stoichiometry composition, QuatSymmetryParameters symmParams) Calculate GLOBAL symmetry results.
static QuatSymmetryResults	QuatSymmetryDetector.calcGlobalSymmetry(Structure structure, QuatSymmetryParameters symmParams, SubunitClustererParameters clusterParams) Calculate GLOBAL symmetry results.

Methods in org.biojava.nbio.structure.symmetry.core that return types with arguments of type QuatSymmetryResults

Modifier and Type	Method and Description
static List<QuatSymmetryResults>	QuatSymmetryDetector.calcLocalSymmetries(List<Subunit> subunits, QuatSymmetryParameters symmParams, SubunitClustererParameters clusterParams) Returns a List of LOCAL symmetry results.
static List<QuatSymmetryResults>	QuatSymmetryDetector.calcLocalSymmetries(Stoichiometry globalComposition, QuatSymmetryParameters symmParams) Returns a List of LOCAL symmetry results.
static List<QuatSymmetryResults>	QuatSymmetryDetector.calcLocalSymmetries(Structure structure, QuatSymmetryParameters symmParams, SubunitClustererParameters clusterParams) Returns a List of LOCAL symmetry results.

Methods in org.biojava.nbio.structure.symmetry.core with parameters of type QuatSymmetryResults

Modifier and Type	Method and Description
boolean	QuatSymmetryResults.isSupersededBy(QuatSymmetryResults other) Determine if this symmetry result is a subset of the other Symmetry result.

Uses of QuatSymmetryResults in org.biojava.nbio.structure.symmetry.utils

Methods in org.biojava.nbio.structure.symmetry.utils that return QuatSymmetryResults

Modifier and Type	Method and Description
static QuatSymmetryResults	SymmetryTools.getQuaternarySymmetry(CeSymmResult result) Given a symmetry result, it calculates the overall global symmetry, factoring out the alignment and detection steps of QuatSymmetryDetector algorithm.