Uses of Class
org.biojava.nbio.structure.symmetry.core.Stoichiometry

Packages that use Stoichiometry

Package	Description
org.biojava.nbio.structure.cluster
org.biojava.nbio.structure.symmetry.core

Uses of Stoichiometry in org.biojava.nbio.structure.cluster

Methods in org.biojava.nbio.structure.cluster that return Stoichiometry

Modifier and Type	Method and Description
static Stoichiometry	SubunitClusterer.cluster(List<Subunit> subunits, SubunitClustererParameters params)
static Stoichiometry	SubunitClusterer.cluster(Structure structure, SubunitClustererParameters params)

Uses of Stoichiometry in org.biojava.nbio.structure.symmetry.core

Methods in org.biojava.nbio.structure.symmetry.core that return Stoichiometry

Modifier and Type	Method and Description
Stoichiometry	Stoichiometry.combineWith(Stoichiometry other) Make a combined Stoichiometry object of this and the other.
Stoichiometry	Stoichiometry.getComponent(int i) Make a Stoichiometry object that corresponds to a single component.
Stoichiometry	QuatSymmetryResults.getStoichiometry()

Methods in org.biojava.nbio.structure.symmetry.core with parameters of type Stoichiometry

Modifier and Type	Method and Description
static QuatSymmetryResults	QuatSymmetryDetector.calcGlobalSymmetry(Stoichiometry composition, QuatSymmetryParameters symmParams) Calculate GLOBAL symmetry results.
static List<QuatSymmetryResults>	QuatSymmetryDetector.calcLocalSymmetries(Stoichiometry globalComposition, QuatSymmetryParameters symmParams) Returns a List of LOCAL symmetry results.
Stoichiometry	Stoichiometry.combineWith(Stoichiometry other) Make a combined Stoichiometry object of this and the other.

Constructors in org.biojava.nbio.structure.symmetry.core with parameters of type Stoichiometry

Constructor and Description
QuatSymmetryResults(Stoichiometry stoichiometry, HelixLayers helixLayers, SymmetryPerceptionMethod method) Constructor for roto-translational symmetries.
QuatSymmetryResults(Stoichiometry stoichiometry, RotationGroup rotationGroup, SymmetryPerceptionMethod method) Constructor for rotational symmetries.