Package org.biojava.nbio.structure.gui

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.

See: Description

Interface Summary

Interface	Description
Selection
StructureViewer

Class Summary

Class	Description
BiojavaJmol	A class that provides a simple GUI for Jmol
JMatrixPanel	a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment Note: This panel displays the transpose of its underlying matrix.
JmolViewerImpl
ScaleableMatrixPanel	A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.
SelectionImpl
SequenceDisplay	A sequence display that can show the results of a protein structure alignment.
WrapLayout	FlowLayout subclass that fully supports wrapping of components.

Enum Summary

Enum	Description
RenderStyle

Package org.biojava.nbio.structure.gui Description

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui. Also MVC interface for structure-gui