Package org.biojava.nbio.structure.geometry

Interface Summary

Interface	Description
SuperPosition	The SuperPosition interface defines and documents the required methods for any superpostion algorithm implementation, so that the input and expected output are uniform.

Class Summary

Class	Description
CalcPoint	Utility operations on Point3d.
Matrices	Matrices contains static methods to operate and transform matrices used in 3D geometry (transformation matrices and rotation matrices).
MomentsOfInertia	The moment of inertia, otherwise known as the angular mass or rotational inertia, of a rigid body determines the torque needed for a desired angular acceleration about a rotational axis.
SuperPositionAbstract	The SuperPositionAbstract contains common code shared by all SuperPosition algorithm implementations.
SuperPositionQCP	Implementation of the Quaternion-Based Characteristic Polynomial algorithm for RMSD and Superposition calculations.
SuperPositionQuat	The SuperPositionQuat implements a quaternion based algorithm to superpose arrays of Points in 3D.
SuperPositions	SuperPositions is a Class that provides static helper methods and an easy access to the whole family of SuperPosition algorithms.
SuperPositionSVD	A class that calculates the superposition between two sets of points using an SVD Matrix Decomposition.
UnitQuaternions	UnitQuaternions is a static Class that contains methods for calculating and using unit quaternions.

Enum Summary

Enum	Description
MomentsOfInertia.SymmetryClass