Package org.biojava.nbio.structure.contact

package org.biojava.nbio.structure.contact
  • Classes
    Class
    Description
    AtomContact
    A pair of atoms that are in contact
    AtomContactSet
    A set of atom-atom contacts to hold the results of intra and inter-chain contact calculations
    AtomIdentifier
     
    BoundingBox
    A bounding box for short cutting some geometrical calculations.
    Contact
    A simple class to store contacts in the form of pairs of indices and a distance associated to them.
    Grid
    A grid to be used for calculating atom contacts through a spatial hashing algorithm.
    GridCell
    A grid cell to be used in contact calculation via spatial hashing algorithm.
    GroupContact
    A pair of residues that are in contact
    GroupContactSet
    A set of residue-residue contacts.
    InterfaceFinder
    A class containing methods to find interfaces in a given structure.
    Pair<T>
    A Pair of objects.
    StructureInterface
    An interface between 2 molecules (2 sets of atoms).
    StructureInterfaceCluster
     
    StructureInterfaceList
    A list of interfaces between 2 molecules (2 sets of atoms)