Uses of Interface
org.biojava.bio.gui.sequence.FeatureRenderer

Packages that use FeatureRenderer

Package	Description
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.

Uses of FeatureRenderer in org.biojava.bio.gui.sequence

Subinterfaces of FeatureRenderer in org.biojava.bio.gui.sequence

Modifier and Type	Interface and Description
interface	BeadFeatureRenderer BeadFeatureRenderers use a 'string of beads' metaphor for displaying features.
interface	ImageMapRenderer ImageMapRenderers create strings representing Features suitable for use in HTML image maps.

Classes in org.biojava.bio.gui.sequence that implement FeatureRenderer

Modifier and Type	Class and Description
class	AbstractBeadRenderer AbstractBeadRenderer is a an abstract base class for the creation of FeatureRenderers which use a 'string of beads' metaphor for displaying features.
class	ArrowedFeatureRenderer A Feature Renderer that paints the Feature as a right facing arrow Based heavily on BasicFeatureRenderer
class	BasicFeatureRenderer
class	BasicImapRenderer BasicImapRenderer is a decorator for BasicFeatureRenderer which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by the BasicFeatureRenderer.
class	EllipticalBeadRenderer EllipticalBeadRenderer renders features as simple ellipses.
class	FeatureLabelRenderer
class	GlyphFeatureRenderer A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter
class	RectangularBeadRenderer RectangularBeadRenderer renders features as simple rectangles.
class	RectangularImapRenderer RectangularImapRenderer is a decorator for RectangularBeadRenderer which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by the RectangularBeadRenderer.
class	RoundRectangularBeadRenderer RoundRectangularBeadRenderer renders features as rectangles with rounded corners.
class	SecondaryStructureFeatureRenderer A GlyphRenderer subclass that specificatlly handles Features pertaining to Secondary Structure (Helices, Turns and Strands).
class	SixFrameZiggyRenderer A feature renderer that computes the data necessary to render multi-exon transcripts without CDS data.
class	StackedFeatureRenderer Allows you to stack multiple feature renderers up (for example a label renderer and a beaded renderer) and have them treated as a single renderer for layout.
class	TickFeatureRenderer
class	ZiggyFeatureRenderer A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.
class	ZiggyImapRenderer ZiggyImapRenderer is a decorator for ZiggyFeatureRenderer which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by the ZiggyFeatureRenderer.

Methods in org.biojava.bio.gui.sequence that return FeatureRenderer

Modifier and Type	Method and Description
FeatureRenderer	PeptideDigestRenderer.createRenderer(int lane)
abstract FeatureRenderer	AbstractPeptideDigestRenderer.createRenderer(int lane)
FeatureRenderer	FeatureBlockSequenceRenderer.getFeatureRenderer() getFeatureRenderer returns the currently active renderer.

Methods in org.biojava.bio.gui.sequence with parameters of type FeatureRenderer

Modifier and Type	Method and Description
void	StackedFeatureRenderer.addRenderer(FeatureRenderer renderer)
void	StackedFeatureRenderer.removeRenderer(FeatureRenderer renderer)
void	FeatureBlockSequenceRenderer.setFeatureRenderer(FeatureRenderer renderer) setFeatureRenderer sets the renderer to be used.

Constructors in org.biojava.bio.gui.sequence with parameters of type FeatureRenderer

Constructor and Description
FeatureBlockSequenceRenderer(FeatureRenderer fRend) Creates a new FeatureBlockSequenceRenderer which uses the specified FeatureRenderer.