Package org.biojava.bio.gui.sequence

Interface PairwiseSequenceRenderer

All Known Implementing Classes:

CrosshairRenderer, PairwiseDiagonalRenderer, PairwiseFilteringRenderer, PairwiseOverlayRenderer

public interface PairwiseSequenceRenderer

PairwiseSequenceRenderers render information about the relationship between two sequences. Its function is analagous to SequenceRenderer for single sequences and is extensively based on that code.

Since:

1.2

Author:

Keith James

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static class	PairwiseSequenceRenderer.PairwiseRendererForwarder	PairwiseRendererForwarder forward events to other renderers.

Method Summary

Modifier and Type	Method	Description
void	paint(Graphics2D g2, PairwiseRenderContext prc)	paints some or all of the information about the sequence pair.
SequenceViewerEvent	processMouseEvent(PairwiseRenderContext prc, MouseEvent me, List path)	processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.

Method Detail

paint

void paint(Graphics2D g2,
           PairwiseRenderContext prc)

paints some or all of the information about the sequence pair.

Parameters:

g2 - a Graphics2D.

prc - a PairwiseRenderContext encapsulating the information to be displayed.

processMouseEvent

SequenceViewerEvent processMouseEvent(PairwiseRenderContext prc,
                                      MouseEvent me,
                                      List path)

processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.

Parameters:

prc - a PairwiseRenderContext.

me - a MouseEvent that caused the request.

path - a List of PairwiseSequenceRenderer instances passed through so far.

Returns:

a SequenceViewerEvent encapsulating the mouse gesture.