Package org.biojava.bio.gui.sequence

Class SequencePanelWrapper

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

org.biojava.bio.gui.sequence.SequencePanelWrapper

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class SequencePanelWrapper
extends JPanel

Handles multiple SequencePanels and Ranges so that a Sequence can be wrapped over more than one line on screen. This is particularly useful for viewing Protein sequences that would be viewed at a single residue resolution. The interface is very similar to that of the SequencePanels that it wraps

Since:

1.5

Author:

Mark Southern

See Also:

SequencePanel, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
protected SequencePanel[]	seqPanels

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
SequencePanelWrapper()	Creates a new instance of WrappedSequencePanel

Method Summary

Modifier and Type	Method	Description
void	addSequenceViewerListener(SequenceViewerListener l)
void	addSequenceViewerMotionListener(SequenceViewerMotionListener l)
int	getDirection()
RangeLocation	getRange()
SequenceRenderer	getRenderer()
RenderingHints	getRenderingHints()
double	getScale()
Sequence	getSequence()
TrackLayout	getTrackLayout()
int	getWrap()
protected void	initComponents()
protected boolean	isActive()
void	paint(Graphics g)
void	paintComponent(Graphics g)
protected void	refreshSequencePanels()
void	removeSequenceViewerListener(SequenceViewerListener l)
void	removeSequenceViewerMotionListener(SequenceViewerMotionListener l)
void	resizeAndValidate()
void	setDirection(int direction)
void	setFont(Font f)
void	setRange(RangeLocation loc)
void	setRenderer(SequenceRenderer renderer)
void	setRenderingHints(RenderingHints hints)
void	setScale(double scale)
void	setSequence(Sequence seq)
void	setTrackLayout(TrackLayout tl)
void	setWrap(int w)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

seqPanels

protected SequencePanel[] seqPanels

Constructor Detail

SequencePanelWrapper

public SequencePanelWrapper()

Creates a new instance of WrappedSequencePanel

Method Detail

initComponents

protected void initComponents()

setTrackLayout

public void setTrackLayout(TrackLayout tl)

getTrackLayout

public TrackLayout getTrackLayout()

isActive

protected boolean isActive()

setScale

public void setScale(double scale)

getScale

public double getScale()

setDirection

public void setDirection(int direction)

getDirection

public int getDirection()

setWrap

public void setWrap(int w)

getWrap

public int getWrap()

setRenderingHints

public void setRenderingHints(RenderingHints hints)

getRenderingHints

public RenderingHints getRenderingHints()

setRenderer

public void setRenderer(SequenceRenderer renderer)

getRenderer

public SequenceRenderer getRenderer()

setSequence

public void setSequence(Sequence seq)

getSequence

public Sequence getSequence()

setRange

public void setRange(RangeLocation loc)

getRange

public RangeLocation getRange()

resizeAndValidate

public void resizeAndValidate()

refreshSequencePanels

protected void refreshSequencePanels()

addSequenceViewerListener

public void addSequenceViewerListener(SequenceViewerListener l)

removeSequenceViewerListener

public void removeSequenceViewerListener(SequenceViewerListener l)

addSequenceViewerMotionListener

public void addSequenceViewerMotionListener(SequenceViewerMotionListener l)

removeSequenceViewerMotionListener

public void removeSequenceViewerMotionListener(SequenceViewerMotionListener l)

setFont

public void setFont(Font f)

Overrides:

setFont in class JComponent

paint

public void paint(Graphics g)

Overrides:

paint in class JComponent

paintComponent

public void paintComponent(Graphics g)

Overrides:

paintComponent in class JComponent