Package org.biojava.bio.seq

Class FeatureFilter.AnnotationContains

java.lang.Object

org.biojava.bio.seq.FeatureFilter.ByAnnotationType

org.biojava.bio.seq.FeatureFilter.AnnotationContains

All Implemented Interfaces:

Serializable, FeatureFilter, OptimizableFilter

Enclosing interface:

FeatureFilter

public static final class FeatureFilter.AnnotationContains
extends FeatureFilter.ByAnnotationType

Retrieve features that contain a given annotation, and that the set of values contains the value given.

Since:

1.3

Author:

Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter

FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

all, leaf, none, top_level

Constructor Summary

Constructors

Constructor	Description
AnnotationContains(Object key, Object value)	Make a new AnnotationContains that will accept features with an annotation bundle where the value-set assosiated with the property key contains a member equal to value.

Method Summary

Modifier and Type	Method	Description
Object	getKey()
Object	getValue()

Methods inherited from class org.biojava.bio.seq.FeatureFilter.ByAnnotationType

accept, equals, getType, hashCode, isDisjoint, isProperSubset, setType, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AnnotationContains

public AnnotationContains(Object key,
                          Object value)

Make a new AnnotationContains that will accept features with an annotation bundle where the value-set assosiated with the property key contains a member equal to value.

Parameters:

key - the Object used as a key in the annotation

value - the Object associated with key in the annotation

Method Detail

getKey

public Object getKey()

getValue

public Object getValue()