Uses of Class
org.biojava.bio.seq.io.agave.StAXFeatureHandler

Packages that use StAXFeatureHandler

Package	Description
org.biojava.bio.seq.io.agave	Classes for converting between AGAVE XML and BioJava objects.

Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave

Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agave

Modifier and Type	Class	Description
class	AGAVEAssemblyHandler
class	AGAVEBioSeqHandler	Handles the AGAVE <bio_sequence> element
class	AGAVEBioSequenceHandler	Handles the AGAVE <bio_sequence> element
class	AGAVECdsHandler	Handles the AGAVE <cds> element
class	AGAVEChromosomeHandler	Handles the AGAVE <chromosome> element
class	AGAVEClassificationHandler
class	AGAVECompResultHandler
class	AGAVEComputationHandler
class	AGAVEContigHandler	Handles the AGAVE <contig> element
class	AGAVEEvidenceHandler
class	AGAVEFragmentOrderHandler
class	AGAVEFragmentOrientationHandler
class	AGAVEGeneHandler
class	AGAVEHandler	Handles the root AGAVE element modified for agave format
class	AGAVEMrnaHandler	Handles the AGAVE <mrna> element
class	AGAVEPredictedProteinHandler	Handles the AGAVE <predicted_protein> element
class	AGAVEQueryRegionPropHandler
class	AGAVEResultGroupHandler
class	AGAVESeqFeatureHandler	seq_feature
class	AGAVESeqMapHandler	sequence_map
class	AGAVETranscriptHandler	transcript
class	AGAVEUnorderedFragmentsHandler	unordered_fragments

Fields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandler

Modifier and Type	Field	Description
protected StAXFeatureHandler	StAXFeatureHandler.staxenv
protected StAXFeatureHandler	StAXPropertyHandler.staxenv

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandler

Modifier and Type	Method	Description
StAXContentHandler	StAXHandlerFactory.getHandler(StAXFeatureHandler staxenv)	Return a suitable StAX content handler.