| AGAVEAnnotFilter |
This interface defines mapping from BioJava into AGAVE format.
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| AGAVEAnnotFilterFactory |
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| AGAVEBioSeqCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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| AGAVECallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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| AGAVEChromosomeCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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| AGAVEContigCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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| AGAVEDbId |
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| AGAVEDbIdCallbackItf |
this is the interface implemented by several classes
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| AGAVEDbIdPropCallbackItf |
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| AGAVEEvidenceCallbackItf |
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| AGAVEFeatureCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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| AGAVEIdAlias |
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| AGAVEIdAliasCallbackItf |
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| AGAVEMapLocation |
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| AGAVEMapPosition |
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| AGAVEMatchRegion |
match_region
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| AGAVEProperty |
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| AGAVEQueryRegion |
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| AGAVERelatedAnnot |
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| AgaveWriter.Indent |
Implements indenting for elements.
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| AGAVEXref |
xref
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| AGAVEXrefCallbackItf |
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| AGAVEXrefs |
xrefs
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| DelegationManager |
Interface which exposes delegation services offered by a StAX
event source.
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| ElementRecognizer |
This class is copied to agave package
Simple interface for filtering SAX/StAX startElement events
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| SequenceHandler |
mark interface
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| SimpleAnnotFilter |
Basic implementation of AGAVEAnnotFilter
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| StAXContentHandler |
Interface for StAX content handlers.
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| StAXContentHandlerBase |
Simple implementation of the StAXContentHandler
interface, with empty implementations for all the methods.
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| StAXFeatureHandler |
StAX handler shamelessly ripped off from Thomas Down's
XFFFeatureSetHandler.
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| StAXHandlerFactory |
Factory for StAX content handlers.
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| StAXPropertyHandler |
StAX handler shamelessly ripped off from Thomas Down's
XFFFeatureSetHandler.
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