AGAVEAnnotFilter |
This interface defines mapping from BioJava into AGAVE format.
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AGAVEAnnotFilterFactory |
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AGAVEBioSeqCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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AGAVECallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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AGAVEChromosomeCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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AGAVEContigCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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AGAVEDbId |
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AGAVEDbIdCallbackItf |
this is the interface implemented by several classes
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AGAVEDbIdPropCallbackItf |
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AGAVEEvidenceCallbackItf |
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AGAVEFeatureCallbackItf |
An interface that can be tested for by nested handlers
when trying to do a callback.
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AGAVEIdAlias |
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AGAVEIdAliasCallbackItf |
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AGAVEMapLocation |
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AGAVEMapPosition |
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AGAVEMatchRegion |
match_region
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AGAVEProperty |
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AGAVEQueryRegion |
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AGAVERelatedAnnot |
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AgaveWriter.Indent |
Implements indenting for elements.
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AGAVEXref |
xref
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AGAVEXrefCallbackItf |
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AGAVEXrefs |
xrefs
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DelegationManager |
Interface which exposes delegation services offered by a StAX
event source.
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ElementRecognizer |
This class is copied to agave package
Simple interface for filtering SAX/StAX startElement events
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SequenceHandler |
mark interface
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SimpleAnnotFilter |
Basic implementation of AGAVEAnnotFilter
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StAXContentHandler |
Interface for StAX content handlers.
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StAXContentHandlerBase |
Simple implementation of the StAXContentHandler
interface, with empty implementations for all the methods.
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StAXFeatureHandler |
StAX handler shamelessly ripped off from Thomas Down's
XFFFeatureSetHandler.
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StAXHandlerFactory |
Factory for StAX content handlers.
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StAXPropertyHandler |
StAX handler shamelessly ripped off from Thomas Down's
XFFFeatureSetHandler.
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