Uses of Interface
org.biojavax.bio.alignment.RemotePairwiseAlignmentOutputProperties

Packages that use RemotePairwiseAlignmentOutputProperties

Package	Description
org.biojavax.bio.alignment	This package contains the interfaces that need to be implemented by discrete alignment services.
org.biojavax.bio.alignment.blast	This package holds implementations of the org.biojava3.ws.alignment interfaces for the NCBI remote QBlast services through the WWW.

Uses of RemotePairwiseAlignmentOutputProperties in org.biojavax.bio.alignment

Methods in org.biojavax.bio.alignment with parameters of type RemotePairwiseAlignmentOutputProperties

Modifier and Type	Method	Description
InputStream	RemotePairwiseAlignmentService.getAlignmentResults(String rid, RemotePairwiseAlignmentOutputProperties out)	Getting the actual alignment results from this instantiated service for a given ID with specific formatting parameters held in a RemotePairwiseAlignmentOutputProperties-implemented object.

Uses of RemotePairwiseAlignmentOutputProperties in org.biojavax.bio.alignment.blast

Classes in org.biojavax.bio.alignment.blast that implement RemotePairwiseAlignmentOutputProperties

Modifier and Type	Class	Description
class	RemoteQBlastOutputProperties	The actual implementation of the RemotePairwiseAlignmentOutputProperties interface for the QBlast service.

Methods in org.biojavax.bio.alignment.blast with parameters of type RemotePairwiseAlignmentOutputProperties

Modifier and Type	Method	Description
InputStream	RemoteQBlastService.getAlignmentResults(String id, RemotePairwiseAlignmentOutputProperties rb)	This method extracts the actual Blast report for this request ID.