Uses of Package
org.biojava.nbio.ontology

Packages that use org.biojava.nbio.ontology

Package	Description
org.biojava.nbio.ontology
org.biojava.nbio.ontology.io	Tools for loading and saving ontologies.
org.biojava.nbio.ontology.obo

Classes in org.biojava.nbio.ontology used by org.biojava.nbio.ontology

Class and Description
AbstractTerm Abstract implementation of term This provides basic change-forwarding functionality from the annotation and ontology properties.
AlreadyExistsException Thrown to indicate that a term or triple can't be added to an ontology because it is already present.
IntegerOntology
IntegerOntology.IntTerm
Ontology An ontology.
OntologyException Thrown to indicate an error in an Ontology object
OntologyFactory A factory for Ontology instances.
OntologyOps This is an interface for optimizing ontology operators.
OntologyTerm A term in an ontology which identifies another ontology.
RemoteTerm A term in another ontology.
Synonym
Term A term in an ontology.
Term.Impl Simple in-memory implementation of an ontology term.
Triple A triple in an ontology.
Variable

Classes in org.biojava.nbio.ontology used by org.biojava.nbio.ontology.io

Class and Description
Ontology An ontology.
OntologyException Thrown to indicate an error in an Ontology object
OntologyFactory A factory for Ontology instances.

Classes in org.biojava.nbio.ontology used by org.biojava.nbio.ontology.obo

Class and Description
Ontology An ontology.
Synonym