Uses of Interface
org.biojava.nbio.structure.align.ce.UserArgumentProcessor

Packages that use UserArgumentProcessor

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.fatcat	Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
org.biojava.nbio.structure.align.seq

Uses of UserArgumentProcessor in org.biojava.nbio.structure.align.ce

Classes in org.biojava.nbio.structure.align.ce that implement UserArgumentProcessor

Modifier and Type	Class and Description
class	AbstractUserArgumentProcessor Base class for a new structure alignment CLI.
class	CeCPUserArgumentProcessor
class	CeSideChainUserArgumentProcessor
class	CeUserArgumentProcessor process the arguments from command line

Uses of UserArgumentProcessor in org.biojava.nbio.structure.align.fatcat

Classes in org.biojava.nbio.structure.align.fatcat that implement UserArgumentProcessor

Modifier and Type	Class and Description
class	FatCatUserArgumentProcessor

Uses of UserArgumentProcessor in org.biojava.nbio.structure.align.seq

Classes in org.biojava.nbio.structure.align.seq that implement UserArgumentProcessor

Modifier and Type	Class and Description
class	SmithWatermanUserArgumentProcessor