Uses of Class
org.biojava.nbio.alignment.routines.AlignerHelper.Cut

Packages that use AlignerHelper.Cut

Package	Description
org.biojava.nbio.alignment.routines

Uses of AlignerHelper.Cut in org.biojava.nbio.alignment.routines

Methods in org.biojava.nbio.alignment.routines that return AlignerHelper.Cut

Modifier and Type	Method and Description
static AlignerHelper.Cut[]	AlignerHelper.getCuts(int k, AlignerHelper.Subproblem subproblem, int[] dim, boolean anchor0)

Methods in org.biojava.nbio.alignment.routines with parameters of type AlignerHelper.Cut

Modifier and Type	Method and Description
static int	AlignerHelper.addAnchors(AlignerHelper.Cut[] cuts, int[] scores, boolean addScore, int[] anchors)
static void	AlignerHelper.setCuts(int x, AlignerHelper.Subproblem subproblem, AlignerHelper.Last[][] pointers, AlignerHelper.Cut[] cuts)