Uses of Package
org.biojava.nbio.structure.align.model

Packages that use org.biojava.nbio.structure.align.model

Package	Description
org.biojava.nbio.structure.align	Classes for the alignment of structures.
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.client	This package deals with the server communication for auto-downloading pre-calculated alignments.
org.biojava.nbio.structure.align.fatcat	Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
org.biojava.nbio.structure.align.fatcat.calc
org.biojava.nbio.structure.align.gui
org.biojava.nbio.structure.align.gui.aligpanel
org.biojava.nbio.structure.align.gui.jmol	Utility methods for better interaction with Jmol.
org.biojava.nbio.structure.align.model
org.biojava.nbio.structure.align.multiple
org.biojava.nbio.structure.align.seq
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.align.xml	Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
org.biojava.nbio.structure.io	Input and Output of Structures
org.biojava.nbio.structure.symmetry.internal
org.biojava.nbio.structure.symmetry.utils

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.ce

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.client

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.fatcat

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.fatcat.calc

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.gui

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.gui.aligpanel

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.gui.jmol

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.model

Class and Description
AFP A class to represent a FATCAT AFP
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.multiple

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.seq

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.util

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.align.xml

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.io

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.symmetry.internal

Class and Description
AFPChain A bean to contain the core of a structure alignment.

Classes in org.biojava.nbio.structure.align.model used by org.biojava.nbio.structure.symmetry.utils

Class and Description
AFPChain A bean to contain the core of a structure alignment.