Uses of Package
org.biojava.nbio.structure.scop

Packages that use org.biojava.nbio.structure.scop

Package	Description
org.biojava.nbio.structure.align.client	This package deals with the server communication for auto-downloading pre-calculated alignments.
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.
org.biojava.nbio.structure.scop	Parsers and API for SCOP, Structural Classification of Proteins.
org.biojava.nbio.structure.scop.server

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.align.client

Class and Description
ScopDatabase General API how to interact with SCOP
ScopDomain Container for the information for a domain.

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.align.util

Class and Description
ScopDatabase General API how to interact with SCOP
ScopDomain Container for the information for a domain.

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.gui.util

Class and Description
ScopDatabase General API how to interact with SCOP

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.scop

Class and Description
Astral.AstralSet An ASTRAL sequence-identity cutoff with an identifier such as: 1.75A_95 Also contains a URL pointing to a FASTA file containing the representatives.
LocalScopDatabase Classes which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead.
ScopCategory The various categories provided by SCOP.
ScopDatabase General API how to interact with SCOP
ScopDescription Contains data from dir.des.scop.txt_1.75 e.g SunID Cat Class Name Description ----- --- ----- ---- ----------- 26154 px b.47.1.2 d1nrs.1 1nrs L:,H: 125030 px b.47.1.2 d1zgia1 1zgi A:1A-245
ScopDomain Container for the information for a domain.
ScopInstallation This class provides access to the SCOP protein structure classification.
ScopIOException Indicates that an I/O error occurred with SCOP lazy initialization.
ScopMirror Helper class to store paths to the four SCOP files The string "%s" is replaced with the version number.
ScopNode

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.scop.server

Class and Description
ScopDescription Contains data from dir.des.scop.txt_1.75 e.g SunID Cat Class Name Description ----- --- ----- ---- ----------- 26154 px b.47.1.2 d1nrs.1 1nrs L:,H: 125030 px b.47.1.2 d1zgia1 1zgi A:1A-245
ScopDomain Container for the information for a domain.
ScopNode