Uses of Package
org.biojava.nbio.structure.jama

Packages that use org.biojava.nbio.structure.jama

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.nbio.structure.align	Classes for the alignment of structures.
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.gui.jmol	Utility methods for better interaction with Jmol.
org.biojava.nbio.structure.align.helper	Helper classes for structural alignment.
org.biojava.nbio.structure.align.model
org.biojava.nbio.structure.align.multiple
org.biojava.nbio.structure.align.multiple.util
org.biojava.nbio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.geometry
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.jama	Matrix package for from JAMA
org.biojava.nbio.structure.symmetry.utils

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.ce

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.gui.jmol

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.helper

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.model

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.multiple

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.multiple.util

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.pairwise

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.util

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.geometry

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.gui

Class and Description
Matrix Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.jama

Class and Description
CholeskyDecomposition Cholesky Decomposition.
EigenvalueDecomposition Eigenvalues and eigenvectors of a real matrix.
LUDecomposition LU Decomposition.
Matrix Jama = Java Matrix class.
QRDecomposition QR Decomposition.
SingularValueDecomposition Singular Value Decomposition.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.symmetry.utils

Class and Description
Matrix Jama = Java Matrix class.