Uses of Package
org.biojava.nbio.structure.jama

Packages that use org.biojava.nbio.structure.jama

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).
org.biojava.nbio.structure.align	Classes for the alignment of structures.
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.gui.jmol	Utility methods for better interaction with Jmol.
org.biojava.nbio.structure.align.helper	Helper classes for structural alignment.
org.biojava.nbio.structure.align.model
org.biojava.nbio.structure.align.multiple
org.biojava.nbio.structure.align.multiple.util
org.biojava.nbio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.geometry
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.jama	Matrix package for from JAMA
org.biojava.nbio.structure.symmetry.utils

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.ce

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.gui.jmol

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.helper

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.model

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.multiple

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.multiple.util

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.pairwise

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.align.util

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.geometry

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.gui

Class	Description
Matrix	Jama = Java Matrix class.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.jama

Class	Description
CholeskyDecomposition	Cholesky Decomposition.
EigenvalueDecomposition	Eigenvalues and eigenvectors of a real matrix.
LUDecomposition	LU Decomposition.
Matrix	Jama = Java Matrix class.
QRDecomposition	QR Decomposition.
SingularValueDecomposition	Singular Value Decomposition.

Classes in org.biojava.nbio.structure.jama used by org.biojava.nbio.structure.symmetry.utils

Class	Description
Matrix	Jama = Java Matrix class.