Uses of Package
org.biojava.bio.program.homologene

Packages that use org.biojava.bio.program.homologene

Package	Description
org.biojava.bio.program.homologene	Support classes for Homologene data.

Classes in org.biojava.bio.program.homologene used by org.biojava.bio.program.homologene

Class and Description
AbstractOrthologueSet
AbstractOrthoPairCollection An abstract implementation of the OrthoPairCollection interface.
AbstractOrthoPairSet represents the Homologene Group.
DuplicateTaxonException
HomologeneBuilder an interface for Homologene dataset Builders
HomologeneDB Homologene is a NCBI dataset that curates sets of orthologues from the reference model organisms.
Orthologue this entry contains data about the orthologue.
OrthologueFilter
OrthologueSet Interface for classes that store and manipulate orthologues.
OrthologueSet.Iterator An iterator for the contents of an OrthologueSet.
OrthoPair Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.
OrthoPairCollection Interface for a Set of OrthoPairSets
OrthoPairCollection.Iterator Iterator for a OrthoPairCollection
OrthoPairFilter
OrthoPairSet represents the Homologene Group.
OrthoPairSet.Iterator
OrthoPairSetFilter
SimilarityType Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.
SimpleOrthoPairCollection
Taxon