Uses of Class
org.biojava.bio.seq.db.AbstractSequenceDB

Packages that use AbstractSequenceDB

Package	Description
org.biojava.bio.seq.db	Collections of biological sequence data.
org.biojava.bio.seq.distributed	Sequences and SequenceDBs which are composed from data taken from a number of data sources.

Uses of AbstractSequenceDB in org.biojava.bio.seq.db

Subclasses of AbstractSequenceDB in org.biojava.bio.seq.db

Modifier and Type	Class	Description
class	AnnotatedSequenceDB	SequenceDB implementation which lazily applies a SequenceAnnotator to sequences retrieved from a SequenceDB.
class	CachingSequenceDB	SequenceDB implementation that caches the results of another SequenceDB.
class	DummySequenceDB	DummySequenceDB is an implementation which contains only a DummySequence.
class	HashSequenceDB	An implementation of SequenceDB that uses an underlying HashMap to store the sequence objects.
class	IndexedSequenceDB	This class implements SequenceDB on top of a set of sequence files and sequence offsets within these files.
class	SequenceDBWrapper	An abstract implementation of SequenceDB that wraps up another database.
class	SubSequenceDB
class	ViewingSequenceDB	SequenceDB implementation that returns new SequenceView instances wrapping the sequences in an underlying database.

Uses of AbstractSequenceDB in org.biojava.bio.seq.distributed

Subclasses of AbstractSequenceDB in org.biojava.bio.seq.distributed

Modifier and Type	Class	Description
class	DistributedSequenceDB	Sequence database from the meta-DAS system.