Package org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.ByNote
- java.lang.Object
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- org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
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- org.biojavax.bio.db.biosql.BioSQLFeatureFilter.ByNote
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- All Implemented Interfaces:
Serializable
,FeatureFilter
,BioSQLFeatureFilter
- Enclosing interface:
- BioSQLFeatureFilter
public static final class BioSQLFeatureFilter.ByNote extends BioSQLFeatureFilter.HibernateFeatureFilter
A filter that returns all features that have the given note, and the value and rank is checked as well.- Since:
- 1.5
- Author:
- Richard Holland, George Waldon
- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
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Field Summary
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Fields inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
and, conjunctAdd, conjunction, disjunctAdd, disjunction, eq, ge, le, not, or
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Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
all, none
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Fields inherited from interface org.biojava.bio.seq.FeatureFilter
leaf, top_level
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
accept(Feature f)
This method determines whether a feature is to be accepted.Object
asCriterion()
This method returns a Hibernate Criterion object that can be used to query the database.Map
criterionAliasMap()
Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all.boolean
equals(Object o)
Note
getNote()
int
hashCode()
String
toString()
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Method Detail
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accept
public boolean accept(Feature f)
Description copied from interface:FeatureFilter
This method determines whether a feature is to be accepted.- Parameters:
f
- the Feature to evaluate- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
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asCriterion
public Object asCriterion()
Description copied from interface:BioSQLFeatureFilter
This method returns a Hibernate Criterion object that can be used to query the database.- Returns:
- a Hibernate Criterion object representing this filter.
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criterionAliasMap
public Map criterionAliasMap()
Description copied from interface:BioSQLFeatureFilter
Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all. If not, then it must at least return the empty map else you'll get NullPointerExceptions thrown elsewhere.- Specified by:
criterionAliasMap
in interfaceBioSQLFeatureFilter
- Overrides:
criterionAliasMap
in classBioSQLFeatureFilter.HibernateFeatureFilter
- Returns:
- Map a map of property names to aliases used in the criterion.
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